genome viewer
metalife trinity » explorer » genome viewer
Key Features:
- interactive and graphical exploration of genomes
- visualization at different levels of detail: from caryotype to sequence
- visualization of annotated elements from various sources
- visualization of genes, transcripts, ESTs, mRNAs, intron-exon structure, etc.
- visualization of variants (SNPs, splice variants)
- visualization of the distribution of marker genes across the genome
- additional information about genes (pathways, diseases, etc.)
- additional information that is extracted from scientific publications
- various filtering options
Description:
Metalife Genome Viewer visualizes annotated elements of whole genomes. Complete genomes can be explored graphically and interactively. The user may display genomes at different levels of detail simultaneously: from caryotype and cytoband structure of chromosomes, down to single annotated elements and their sequence.
In addition to sequence data like ESTs, mRNAs, intron-exon structures, predicted transcripts and annotated genes from different sources it displays cytogenetic and physical data as well as associations of genes with pathways or diseases. It integrates also information about variants, like SNPs and proven and predicted splice variants. More and more additional information is included from the Metalife's text extraction procedures. The extensive filtering options allow to selectively choose individual elements and different sources of information to display.
The chromosomal location of markers (e.g. genes related to a certain pathway) can be queried and identified directly. The simultaneous graphical display of the location of different elements on the caryomap allows to analyze the distribution of sets of genes (like genes that are generated from experimental results) across the genome.
All elements are connected with the appropriate entries in the Metalife Explorer and with their sources. The resulting renderings may be zoomed and the searches can be interactively refined.
In addition to sequence data like ESTs, mRNAs, intron-exon structures, predicted transcripts and annotated genes from different sources it displays cytogenetic and physical data as well as associations of genes with pathways or diseases. It integrates also information about variants, like SNPs and proven and predicted splice variants. More and more additional information is included from the Metalife's text extraction procedures. The extensive filtering options allow to selectively choose individual elements and different sources of information to display.
The chromosomal location of markers (e.g. genes related to a certain pathway) can be queried and identified directly. The simultaneous graphical display of the location of different elements on the caryomap allows to analyze the distribution of sets of genes (like genes that are generated from experimental results) across the genome.
All elements are connected with the appropriate entries in the Metalife Explorer and with their sources. The resulting renderings may be zoomed and the searches can be interactively refined.
Order installation of local copy of Genome Viewer!
Metalife offers installation of local copy of its products upon licensing. Ordering a local copy benefits private users with the following extra advantages:
- Data security ensured by the management of all analyses and sources locally in your organization's secured network.
- Impossibility of competitor companies to track down your searches in public resources and reveal your interests.
- Custom development of project specific GUI features, new functionalities, DB sources.
- Completely new decisions implementation upon request.